.. _`mapping`:

MAPPING
=======



Mapping refers to the process of aligning short reads to a reference sequence, whether the reference is a complete genome, transcriptome, or de novo assembly. As mapping may refer to any other sequencing technologies.

For more information, see:
  * `Wikibooks on mapping <https://en.wikibooks.org/wiki/Next_Generation_Sequencing_(NGS)/Alignment>`_
  * `Biostars tutorial <https://www.biostars.org/p/75489/>`_




The following workflows and/or categories are available:

.. toctree::
   :maxdepth: 1
   :glob:

   mapping/*